robin
Ex Member
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This is an irobot for homologene download: http://irobotsoft.com/robots/homologene.irb It search for HomoloGenes from a list of input genes, and save the results in an XML file 'homologene.txt'. Need to install the iRobot system (http://irobotsoft.com/download.htm) It includes: *Go to URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene Go to the NCBI Web site *Submit form with 'HomoloGene-Input' Search for HomoloGenes from a list of input genes; User can change input genes by: (1) right-click on the form action, (2) select "Form Inputs -> From Database ..." from the popup menu; (3) click on the "New" link on the right of the datasource; (4) click on the "Input Text" radio; (5) change the list of input genes; (6) click "done". A variable 'InputGene' is assigned in the event. *Get a list of links like 'HomoloGene:68420. Ge$' Extract search results *Get a table of data include 'H.sapiens VPS26A' All HomoloGenes are saved in an XML file. Example output format: <Variables Name="" Date="2006/12/16 23:46:56"> <VariableData Name="InputGene">VPS26A</VariableData> <VariableData Name="HomoloGene">HomoloGene:68420. Gene conserved in Eukaryota</VariableData> <VariableData Name="GeneID">H.sapiens VPS26A</VariableData> <VariableData Name="GeneDescription">vacuolar protein sorting 26 homolog A (yeast)</VariableData> <VariableData Name="ProteinID">NP_004887.2</VariableData> </Variables> <Variables Name="" Date="2006/12/16 23:46:56"> <VariableData Name="InputGene">VPS26A</VariableData> <VariableData Name="HomoloGene">HomoloGene:68420. Gene conserved in Eukaryota</VariableData> <VariableData Name="GeneID">P.troglodytes VPS26A</VariableData> <VariableData Name="GeneDescription">vacuolar protein sorting 26 homolog A</VariableData> <VariableData Name="ProteinID">XP_001163569.1</VariableData> </Variables>
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